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gblup  (Golden Helix)

 
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    Golden Helix gblup
    Gblup, supplied by Golden Helix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gblup/gblup/pmc07144088-88-12-25
    Average 90 stars, based on 1 article reviews
    gblup - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Biomarker Discovery:

    Article Title: Accurate Genomic Predictions for Chronic Wasting Disease in U.S. White-Tailed Deer
    Article Snippet: .. For all genomic prediction analyses involving k -fold cross validation, we used GBLUP as previously described ( ) and implemented in SVS v8.8.2 or v8.8.3 (Golden Helix), where the variance components were again estimated using the REML-based EMMA technique ( Kang et al. 2010 ) with a genomic relationship matrix ( G ) ( ; ). .. For WTD GBLUP analyses, consider the general mixed model equation: y = X f B f + u + ε , across n WTD samples where fixed effects specified as B f include the intercept and any additional covariates ( i.e. , U.S. region, sex, age); but also assume V a r ( ε ) = σ e 2 I , as above, and that the random effects u are additive genetic merits ( i.e. , genomically estimated breeding values or GEBVs) for these WTD samples, which are produced from m markers as u = M α , where M is a n × m matrix, and α is a vector where α k is the allele substitution effect (ASE) for marker k . In this study, we used overall normalization for matrix M , as implemented in SVS v8.8.2 or v8.8.3 (Golden Helix), and explored solutions with and without gender corrections ( i.e. , full dosage compensation, no dosage compensation) , to produce GEBVs for all WTD samples as well as estimates of ASE for all SNPs.



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    Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step <t>GBLUP</t> (ssGBLUP). b GWAS using weighted single-step GBLUP <t>(wssGBLUP)</t>
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    Image Search Results


    Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step GBLUP (ssGBLUP). b GWAS using weighted single-step GBLUP (wssGBLUP)

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step GBLUP (ssGBLUP). b GWAS using weighted single-step GBLUP (wssGBLUP)

    Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Summary of QTL identified for IHNV survival DAYS

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Summary of QTL identified for IHNV survival DAYS

    Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Co-localized 1-Mb QTL windows associated with IHNV survival DAYS (EGV ≥ 2%) detected with weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) with BayesB

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Co-localized 1-Mb QTL windows associated with IHNV survival DAYS (EGV ≥ 2%) detected with weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) with BayesB

    Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Accuracy and bias of breeding value predictions for IHNV resistance using three methods

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Accuracy and bias of breeding value predictions for IHNV resistance using three methods

    Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Relative increase in accuracy of genomic prediction for IHNV resistance (DAYS and STATUS) over pedigree-based BLUP (PBLUP). Genomic predictions were performed with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP)

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Relative increase in accuracy of genomic prediction for IHNV resistance (DAYS and STATUS) over pedigree-based BLUP (PBLUP). Genomic predictions were performed with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP)

    Article Snippet: The data provided represents all the genomic windows that had an EGV higher than 1% when performing GWAS for IHNV survival DAYS and STATUS using weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Experimental variables and genetic parameter estimates for IHNV resistance in rainbow trout

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Experimental variables and genetic parameter estimates for IHNV resistance in rainbow trout

    Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step GBLUP (ssGBLUP). b GWAS using weighted single-step GBLUP (wssGBLUP)

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Manhattan plot showing the association of 1-Mb sliding-windows with IHNV survival DAYS. a GWAS using single-step GBLUP (ssGBLUP). b GWAS using weighted single-step GBLUP (wssGBLUP)

    Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Co-localized 1-Mb QTL windows associated with IHNV survival DAYS (EGV ≥ 2%) detected with weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) with BayesB

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Co-localized 1-Mb QTL windows associated with IHNV survival DAYS (EGV ≥ 2%) detected with weighted single-step GBLUP (wssGBLUP) and single-step Bayesian multiple regression (ssBMR) with BayesB

    Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Accuracy and bias of breeding value predictions for IHNV resistance using three methods

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Accuracy and bias of breeding value predictions for IHNV resistance using three methods

    Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Relative increase in accuracy of genomic prediction for IHNV resistance (DAYS and STATUS) over pedigree-based BLUP (PBLUP). Genomic predictions were performed with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP)

    Journal: Genetics, Selection, Evolution : GSE

    Article Title: Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population

    doi: 10.1186/s12711-019-0489-z

    Figure Lengend Snippet: Relative increase in accuracy of genomic prediction for IHNV resistance (DAYS and STATUS) over pedigree-based BLUP (PBLUP). Genomic predictions were performed with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP)

    Article Snippet: These plots represent the explained additive genetic variance for IHNV survival STATUS by each 1-Mb-sliding window that was tested along the rainbow trout genome with single-step GBLUP (ssGBLUP) and weighted single-step GBLUP (wssGBLUP) in the Clear Springs Foods, Inc. rainbow trout breeding population.

    Techniques:

    Mean (±SE) accuracies based on all 32,036 SNPs.

    Journal: Frontiers in Plant Science

    Article Title: Potential of Genome-Wide Studies in Unrelated Plus Trees of a Coniferous Species, Cryptomeria japonica (Japanese Cedar)

    doi: 10.3389/fpls.2018.01322

    Figure Lengend Snippet: Mean (±SE) accuracies based on all 32,036 SNPs.

    Article Snippet: For male fecundity, GBLUP had higher accuracies for all populations (N-Kanto, 0.617; S-Kanto, 0.357; Kyushu, 0.634).

    Techniques: